Citrate utilization test: Principle, Procedure, expected results and positive organisms 4.34/5 (32)

Citrate utilization test is commonly employed as part of a group of tests, the IMViC (Indole, Methyl Red, VP and Citrate)  tests, that distinguish between members of the Enterobacteriaceae family based on their metabolic by-products. Citrate utilization can be used to distinguish between coliforms such as Enterobacter aerogenes (+ve) which occur naturally in the soil and in aquatic environments and fecal coliforms such as Escherichia coli (-ve)  whose presence would be indicative of fecal contamination.

Citrate Test Right: Negative Left: Positive
Citrate Test
Right: Negative
Left: Positive

Citrate utlilization test is used to determine the ability of bacteria to utilize sodium citrate as its only carbon source and inorganic (NH4H2PO4) is the sole fixed nitrogen source.


When an organic acid such as citrate (remember Krebs cycle) is used as a carbon and energy source, alkaline carbonates and bicarbonates are produced ultimately.  In addition, ammonium hydroxide is produced when the ammonium salts in the medium are used as the sole nitrogen source.

Utilization of exogenous citrate requires the presence of citrate transport proteins (permeases). Upon uptake by the cell, citrate is cleaved by citrate lyase to oxaloacetate and acetate. The oxaloacetate is then metabolized to pyruvate and CO2.

Citrate = oxaloacetate + acetate

oxalacetate = pyruvate + CO2

Citrate Utilization Test
Citrate Utilization Test

Further metabolic breakdown is dependent upon the pH of the medium.

A. Under alkaline conditions, pyruvate is metabolized to acetate and formate.
pyruvate = acetate + formate

B. At pH 7.0 and below, lactate and acetoin are also produced.
pyruvate = acetate + lactate + CO2
pyruvate = acetoin + CO2
The carbon dioxide that is released will subsequently react with water and the sodium ion in the medium to produce sodium carbonate, an alkaline compound that will raise the pH.  In addition, ammonium hydroxide is produced when the ammonium salts in the medium are used as the sole nitrogen source.

Growth usually results in the bromothymol blue indicator, turning from green to blue. The bromothymol blue pH indicator is a deep forest green at neutral pH.  With an increase in medium pH to above 7.6, bromothymol blue changes to blue

Citrate utilization test A: Negative B: Positive
Citrate utilization test (Image source: Microbelibrary)
A: Negative
B: Positive

Procedure of citrate utilization test:

  1. Inoculate simmons citrate agar lightly on the slant by touching the tip of a needle to a colony that is 18 to 24 hours old.
  2. Incubate at 35oC to 37oC for  18 to 24 hours. Some organisms may require up to 7 days of incubation due to their limited rate of growth on citrate medium.
  3. Observe the development of blue color; denoting alkalinization.

Expected results in citrate utilization test:

Citrate positive:  growth will be visible on the slant surface and the medium will be an intense Prussian blue. The alkaline carbonates and bicarbonates produced as by-products of citrate catabolism raise the pH of the medium to above 7.6, causing the bromothymol blue to change from the original green color to blue .

Citrate negative:  trace or no growth will be visible.  No color change will occur; the medium will remain the deep forest green color of the uninoculated agar.  Only bacteria that can utilize citrate as the sole carbon and energy source will be able to grow on the Simmons citrate medium, thus a citrate-negative test culture will be virtually indistinguishable from an uninoculated slant

Quality Control strains used in citrate utilization test

  • Positive: Klebsiella pneumoniae
  • Negative: Escherichia coli

 List of Bacteria which gives positive citrate utilization test

  1. Klebsiella pneumoniae
  2. Enterobacter species (minority of strains gives negative result)
  3. Citrobacter freundii
  4. Salmonella other than Typhi and Paratyphi A
  5. Serratia marcescens
  6. Proteus mirabilis (minority of strains gives negative result)
  7. Providencia

Citrate Test: variable (different strains give different results)

  1. Proteus vulgaris
  2. Vibrio cholerae
  3. Vibrio parahaemolyticus

Citrate test: negative

  1. Escherichia coli
  2. Shigella spp
  3. Salmonella Typhi
  4. Salmonella Paratyphi A
  5. Morganella morganii
  6. Yersinia enterocolitica

Although uncommon, natural E. coli variants that are citrate positive have been isolated.  Citrate-negative strains of E. aerogenes have also been found.

Uses of Citrate Utilization Test
Citrate utilization test is often part of a battery of tests used to identify gram-negative pathogens of Enterobacteriaceae family and environmental isolates. For instance, test kits such as the API-20E  and Enterotube II  include citrate utilization medium as one of the diagnostic tests.

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3 thoughts on “Citrate utilization test: Principle, Procedure, expected results and positive organisms

  1. Hello,
    A lot of acids are generated through citrate metabolization, so I don’t understand how utilization of exogenous citrate raise the pH.
    Do you know some publication with further explanations ?

    Thanks in advance,


  2. Hello,
    Thank you for your blog, it is very useful. Could you explain the nitrogen aspect of citrate agar utilization. If the ammonium salts are utilized as the sole source of nitrogen, how exactly is ammonium hydroxide produced? What is the biochemical pathway?


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