Spirochetes: Morphology, Classification, Disease
What spirochetes are: long, thin, coiled bacteria that move with internal flagella and cannot be seen on ordinary stains. The three human pathogens, Treponema, Borrelia, and Leptospira, and the diseases they cause.
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Spirochetes are long, thin, flexible, helical bacteria. These motile, gram-negative organisms are classified into several genera on the basis of habitat, pathogenicity, phylogeny, morphological and physiological characteristics.
These long slender bacteria are only a fraction of a micron in diameter but 5 to 250 microns long. They are tightly coiled, and so look like miniature springs or telephone cords. Spirochetes do not take up ordinary stains but can be stained only by silver impregnation stains, except Borrelia which is poorly gram stained.
Three features make spirochetes a distinctive group and explain how they cause disease and how they are diagnosed:
- They are too thin to see on ordinary stains. Most spirochetes are so slender they cannot be seen by routine light microscopy or Gram stain, so they are studied by dark-field microscopy, silver stains, or immunofluorescence, and often diagnosed by serology rather than by seeing the organism. (Borrelia is the exception, thick enough to show on a Giemsa-stained blood smear.)
- They move with internal flagella. Their flagella run inside the cell (endoflagella, in the periplasm), not outside, which gives spirochetes their characteristic corkscrew and flexing motility and lets them burrow through tissue and viscous fluid. This motility is a genuine virulence feature.
- Only three genera cause human disease: Treponema (syphilis), Borrelia (Lyme disease and relapsing fever), and Leptospira (leptospirosis). The rest are harmless environmental organisms. Learning spirochetes really means learning these three.
Most of the genera of spirochetes are saprophytes and are widespread in aquatic environments and in animals. Only three genera Treponema, Borrelia, and Leptospira contain organisms pathogenic for humans. Spirochetes cause several diseases, notably syphilis, Lyme disease, relapsing fever, leptospirosis, yaws, pinta, etc.
The order Spirochaetales includes two families of spiral bacteria, Spirochaetaceae and Leptospiraceae.
Order Spirochaetales
- Family Spirochaetaceae: Four genera Treponema, Borrelia, Spirochaeta, Cristispira
- Family Leptospiraceae: Two genera Leptospira, Leptonema
Differentiation of the genera within the family is based on the number of axial fibrils, the number of insertion disks present and biochemical and metabolic features.
Structure
Spirochete motility comes from flagella anchored at each pole. Unlike typical bacterial flagella, these do not project outside the cell. They fold back along the protoplasmic cylinder and stay within the periplasm, which is why they are called endoflagella. In addition, both endoflagella and the protoplasmic cylinder are surrounded by a flexible membrane called the outer sheath.
Figure: Endoflagella of spirochetes
Cell wall
Cell wall of spirochetes is similar to that of gram-negative bacteria but differs by bearing endoflagella. It is more complex, consisting of:
- Outer membrane
- Periplasmic space containing flagella
- Peptidoglycan layer
- Inner (cytoplasmic) membrane
Endoflagella
Endoflagella are present in the periplasmic space between the outer membrane and the peptidoglycan layer. They attach to the membrane only at the pole. The number of periplasmic flagella varies from species to species.
Endoflagella are responsible for the motility of spirochetes. Motility may be of various types, such as:
- Flexion-extension type
- Corkscrew type rotatory movement
- Translatory type
Spirochetes vs. Spirilla
Though spirochetes and spirilla differ phylogenetically, spirilla with many turns can superficially resemble spirochetes. Spirilla do not have the spirochete's outer sheath or endoflagella. Instead they have typical external bacterial flagella.
Two common confusions
Weil's disease is not the Weil-Felix test. Weil's disease is the severe form of leptospirosis (a spirochete infection). The Weil-Felix test is an unrelated test for rickettsial infection that uses Proteus antigens. They share only the name "Weil."
Not every "coiled" bacterium is a spirochete. Spirilla (like Campylobacter and Helicobacter) are curved or spiral but have ordinary external flagella and no outer sheath. True spirochetes have internal flagella (endoflagella) inside an outer sheath. The internal flagella are what define a spirochete.
Morphological differences between Treponema, Borrelia and Leptospira
| Feature | Treponema | Borrelia | Leptospira |
|---|---|---|---|
| Size | 6–14 μm × 0.2 μm | 10–30 μm × 0.2–0.5 μm | 6–20 μm × 0.1 μm |
| Spirals (in number) | 6-12 | 3-10 | Numerous and tightly coiled with hooked ends |
| Wavelength | 1 μm | 3 μm | 0.5 μm |
| Amplitude of spiral | 1-1.5 μm | Up to 2 μm | 0.1 μm |
| Endoflagella of each pole | 3-4 | 7-11 | 1 |
Diseases caused by various genera of spirochetes
| Spirochetes | Disease | Transmission |
|---|---|---|
| T. pallidum subsp. pallidum | Syphilis | Sexual contact |
| T. pertenue | Yaws | Direct contact |
| T. carateum | Pinta | Direct contact |
| B. burgdorferi | Lyme disease | Tick-borne |
| B. recurrentis | Relapsing fever | Louse-borne |
| L. interrogans | Leptospirosis | Contact with rodent urine |
How to remember
Three pathogens: Treponema, Borrelia, Leptospira. Of all the spirochetes, only these three cause human disease: Treponema (syphilis), Borrelia (Lyme and relapsing fever), Leptospira (leptospirosis). Everything else is environmental. Learn the three.
Flagella on the inside. What makes a spirochete a spirochete is its internal flagella (endoflagella), running inside an outer sheath rather than sticking out. This gives the corkscrew motility and lets it drill through tissue. Inside flagella = spirochete.
Too thin to stain, except Borrelia. Most spirochetes are too slender for the Gram stain and need dark-field, silver stain, or serology. Borrelia is the exception: fat enough to see on a Giemsa blood smear. So Borrelia is the one you can catch on a routine smear.
Match the genus to how you diagnose it. Treponema (can't culture, diagnose by serology), Borrelia (see it on a blood smear in relapsing fever; serology for Lyme), Leptospira (culture is slow; MAT serology; test blood early, urine late). The diagnosis follows the biology.
Key exam facts in one table
| Fact | Detail |
|---|---|
| What they are | Long, thin, coiled bacteria with internal flagella |
| Motility | Endoflagella (periplasmic) → corkscrew/flexing movement |
| Staining | Too thin for Gram stain; dark-field, silver stain, immunofluorescence (except Borrelia, seen on Giemsa) |
| Human pathogens | Treponema, Borrelia, Leptospira (only these three) |
| Treponema | Syphilis (T. pallidum), yaws, pinta, bejel |
| Borrelia | Lyme disease (B. burgdorferi), relapsing fever (B. recurrentis and others) |
| Leptospira | Leptospirosis (L. interrogans); severe form = Weil's disease |
| Endoflagella per pole | Treponema 3–4; Borrelia 7–11; Leptospira 1 |
| Spirochete vs spirillum | Spirochetes have internal flagella + outer sheath; spirilla have external flagella |
| Disambiguation | Weil's disease (leptospirosis) ≠ Weil-Felix test (rickettsia) |
Where students get confused
Only three genera cause human disease. Most spirochetes are harmless environmental organisms. The human pathogens are Treponema, Borrelia, and Leptospira. Knowing which three matters more than the full taxonomy.
Spirochetes are not the same as spirilla. Both look coiled, but spirochetes have internal flagella inside an outer sheath, while spirilla (like Campylobacter) have ordinary external flagella. The endoflagella are the defining feature.
Most spirochetes cannot be seen on a Gram stain. They are too thin. Diagnosis uses dark-field microscopy, silver staining, or serology. Borrelia is the exception, thick enough to see on a stained blood smear.
Weil's disease vs the Weil-Felix test. Weil's disease is severe leptospirosis. The Weil-Felix test detects rickettsial infection. Same name, unrelated.
References and further readings
- Tille, P. M. (2022). Bailey & Scott's Diagnostic Microbiology (15th ed.). Elsevier.
- Procop, G. W., et al. (2017). Koneman's Color Atlas and Textbook of Diagnostic Microbiology (7th ed.). Wolters Kluwer.
- Murray, P. R., Rosenthal, K. S., & Pfaller, M. A. (2020). Medical Microbiology (9th ed.). Elsevier.
Frequently Asked Questions
What are spirochetes?
What are spirochetes?
Long, thin, spiral-shaped bacteria that move using flagella located inside the cell (endoflagella), giving them a characteristic corkscrew motility. They are too slender to see on ordinary stains and include the causes of syphilis, Lyme disease, relapsing fever, and leptospirosis.
Which spirochetes cause human disease?
Which spirochetes cause human disease?
Only three genera: Treponema (syphilis, yaws, pinta), Borrelia (Lyme disease and relapsing fever), and Leptospira (leptospirosis). All other spirochetes are harmless environmental organisms.
How are spirochetes different from other bacteria?
How are spirochetes different from other bacteria?
Their flagella run inside the cell, in the space between the outer membrane and the cell wall (endoflagella), rather than sticking out. This internal-flagella arrangement, wrapped in an outer sheath, gives spirochetes their spiral shape and burrowing motility and defines the group.
Why can't most spirochetes be seen on a Gram stain?
Why can't most spirochetes be seen on a Gram stain?
They are too thin to take up ordinary stains or be resolved by routine light microscopy. They are visualized instead by dark-field microscopy, silver staining, or immunofluorescence, or diagnosed by serology. Borrelia is thick enough to be seen on a Giemsa-stained blood smear.
What is the difference between a spirochete and a spirillum?
What is the difference between a spirochete and a spirillum?
Both are spiral-shaped, but spirochetes have internal flagella and a flexible outer sheath, while spirilla (such as Campylobacter and Helicobacter) have ordinary external flagella and no outer sheath. The internal flagella are what make a spirochete.
Is Weil's disease the same as the Weil-Felix test?
Is Weil's disease the same as the Weil-Felix test?
No. Weil's disease is the severe form of leptospirosis, caused by a spirochete. The Weil-Felix test is an unrelated test for rickettsial infection that uses Proteus antigens. They share only the name.

Tankeshwar Acharya, MSc (Medical Microbiology)
Tankeshwar Acharya is an Assistant Professor in the Department of Microbiology at Patan Academy of Health Sciences (PAHS), Nepal, where he has been teaching and practicing clinical microbiology for over 14 years. He is the founder of Microbe Online, one of the leading free microbiology education resources on the web, covering bacteriology, mycology, parasitology, immunology, and clinical laboratory diagnostics written from direct experience in both the classroom and the diagnostic laboratory.
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