Culture media are a combination of pre-defined ingredients that support the growth and proliferation of microorganisms in an artificial/in vitro environment. They are used for the isolation of organisms from various samples such as clinical specimens, food, or the environment.
Based on the consistency, culture media are further categorized as solid, semisolid, and liquid (broth). Functionally, culture media can be classified as differential, selective, enriched, enrichment, assay, transport, etc.
Martin Lewis Agar is a specialized microbiological culture medium widely used in clinical and research laboratories to isolate and identify pathogenic Neisseria species, such as Neisseria gonorrhoeae (causing gonorrhea) and Neisseria meningitidis (causing meningitis). This selective medium is critical for accurate diagnosis and effective management of these serious bacterial infections, making it an essential tool for microbiology students and professionals.
Historical Context of Martin Lewis Agar
Martin Lewis Agar is an advanced version of Thayer-Martin Agar, developed to improve the isolation of Neisseria gonorrhoeae from clinical specimens with mixed microbial flora. By refining the antibiotic composition and concentrations, Martin Lewis Agar enhances selectivity and recovery rates, making it more effective for isolating both Neisseria gonorrhoeae and Neisseria meningitidis. Understanding its development helps microbiology students appreciate the evolution of selective media in clinical diagnostics.
Principle of Martin Lewis Agar
Martin Lewis Agar operates as a selective medium designed to promote the growth of pathogenic Neisseria species while suppressing unwanted bacteria and fungi. It builds on the foundation of Thayer-Martin Agar with improved antibiotic formulations for better specificity.
How It Works:
Selective Inhibition: The medium contains antibiotics such as:
Nutrient-Rich Base: The medium uses chocolate agar enriched with hemoglobin to provide essential nutrients for Neisseria growth.
Growth Supplements: IsoVitaleX (or equivalent VX supplement) supplies vital growth factors like glucose, L-cysteine, and NAD to support Neisseria species.
Composition of Martin Lewis Agar
Martin Lewis Agar is a modified Thayer-Martin Agar with increased vancomycin levels to enhance selectivity. Its base is chocolate agar, with a final pH of 7.2 ± 0.2 at 25°C. Below is the detailed composition:
Composition per liter:
Components
Amount
Pancreatic digest of casein
7.5 g
Hemoglobin (Hb)
10.0 g
Selected meat peptone
7.5 g
NaCl (sodium chloride)
5 g
K2HPO4 (Dipotassium phosphate)
4 g
Corn starch
1 g
KH2PO4 (Monopotassium phosphate)
1 g
Supplement solution
10 ml
VCAT inhibitor
10 ml
Agar
12 g
Final pH 7.2 ± 0.22 at 25°C
Source: Martin-Lewis agar is available as a prepared medium from BD Diagnostic Systems.
Composition of Supplement Solution per liter:
Components
Amount
Glucose
100 g
L-cysteine HCI
25.9 g
L-glutamine
10 g
L-cystine
1.1 g
Adenine
1 g
Nicotinamide adenine dinucleotide
0.25 g
Vitamin B12
0.1 g
Thiamine pyrophosphate
0.1 g
Guanine HCl
0.03 g
Fe(NO3).6H2O
0.02 g
p-Aminobenzoic acid
0.013 g
Thiamine HCl
3.0 mg
Source: The supplement solution IsoVitaleX® enrichment is available from BD Diagnostic Systems. This enrichment may be replaced by supplement VX from BD Diagnostic Systems.
Composition of VCAT inhibitor per 10.0mL
Components
Amount
Colistin
7.5 mg
Trimethoprim lactate
5 mg
Vancomycin
4 mg
Anisomycin
0.02 g
Preparation of Martin Lewis Agar
Add all components (except supplement solution and VCAT inhibitor) to 980 mL of distilled/deionized water.
Gently heat and stir until boiling.
Autoclave at 121°C (15 psi) for 15 minutes.
Cool to 45–50°C.
Aseptically add sterile supplement solution and VCAT inhibitor, mixing thoroughly.
Pour into sterile Petri dishes.
Storage and Shelf Life
Dehydrated Media: Store in a sealed container in the dark at temperatures below 30°C.
Prepared Media: Refrigerate at 2–8°C and use within 60 days.
Caution: Avoid using media showing signs of deterioration (e.g., shrinking, cracking, or discoloration) or contamination, as this may lead to inaccurate results.
Uses of Martin Lewis Agar
Martin Lewis Agar is primarily used for:
Isolating Neisseria gonorrhoeae and Neisseria meningitidis from clinical specimens (e.g., urethral, cervical, or cerebrospinal fluid samples) with mixed microbial flora.
Supporting the growth of penicillinase-producing Neisseria strains when enriched with Penicillin G.
Facilitating accurate diagnosis of gonorrhea and meningitis in clinical settings.
Its selective antibiotics (vancomycin, colistin, anisomycin, and trimethoprim) effectively suppress Gram-positive bacteria, non-Neisseria Gram-negative bacteria, fungi, and Proteus species, ensuring reliable isolation of target pathogens.
Limitation of Martin Lewis Agar
Nutritional Variability: Some Neisseria strains may exhibit poor growth due to nutritional differences.
Antibiotic Sensitivity: Certain Neisseria gonorrhoeae strains may be inhibited by the antibiotics in the medium.
Need for Non-Selective Media: A parallel non-selective medium (e.g., chocolate agar) is recommended to ensure comprehensive isolation.
Confirmation Required: Additional biochemical or serological tests are necessary to confirm Neisseria species identity.
References
Martin, J. E., Armstrong, J. H., & Smith, P. B. (1974). New system for cultivation of Neisseria gonorrhoeae. Applied microbiology, 27(4), 802–805. https://doi.org/10.1128/am.27.4.802-805.1974
Granato, P. A., Paepke, J. L., & Weiner, L. B. (1980). Comparison of modified New York City medium with Martin-Lewis Medium for recovery of Neisseria gonorrhoeae from clinical specimens. Journal of clinical microbiology, 12(6), 748–752. https://doi.org/10.1128/jcm.12.6.748-752.1980
Atlas, R.M., & Snyder, J.W. (2013). Handbook of Media for Clinical and Public Health Microbiology (1st ed.). CRC Press. https://doi.org/10.1201/b15973
Thayer J. and Martin J.E. Jr., 1966, Public Health Rep., 81:559
Columbia agar with colistin and nalidixic acid (CNA) is a selective and differential medium for isolating and differentiating pathogenic gram-positive cocci from clinical and non-clinical samples. Antimicrobials colistin (C) and nalidixic acid (NA) inhibit gram-negative organisms.
Colistin, a polypeptide antibiotic of the polymyxin group, disrupts the cell membranes of gram-negative organisms. Nalidixic acid, a first-generation quinolone, blocks DNA replication in susceptible gram-negative bacteria.
Columbia agar base is a nutritionally rich formula containing three peptone sources and 5% defibrinated (whole blood with fibrin removed to prevent clotting) sheep blood. This supportive medium is used to differentiate bacterial colonies based on the hemolytic reactions.
Gram-negative bacteria such as members of Enterobacteriaceae and Pseudomonas species are suppressed, while staphylococci, streptococci, enterococci, and yeast grows on Columbia CNA agar.
Table of Contents
Composition
Columbia CNA agar is prepared by adding 10 mg/liter of colistin and 15 mg/liter of nalidixic acid in Columbia Agar Base.
Columbia agar base is a nutritionally rich medium containing 5% defibrinated blood. Sheep blood provides X and V factors for the growth of fastidious gram-positive bacteria and helps differentiate them based on hemolytic reactions.
Peptone supports the luxuriant growth of microorganisms. Cornstarch serves as a neutralizer source. The composition of Columbia CNA agar is as follows*;
Product
Gram/Liter
Casein-Meat Peptone
10 g
Casein-Yeast Peptone
10 g
Heart Peptone
3 g
Sodium chloride
5 g
Corn starch
1 g
Agar
13.5 g
Defibrinated sheep blood
50 mL
Colistin sulfate
10 mg
Nalidixic Acid
15 mg
pH: 7.3 +/- 0.2
*Variations in the composition may be seen in media prepared by different manufacturers.
Preparation of Media
Suspend 44.02 grams in 1000 ml purified/distilled water.
Heat to boiling to dissolve the medium completely. Do not overheat the medium.
Sterilize by autoclaving at 15 lbs pressure at 121 for 15 minutes.
Cool to 45-50°C and aseptically add 5% v/v sterile, defibrinated blood.
Mix well and pour into sterile Petri plates (20-25 ml per plate in 90 mm Petri plate).
Storage and Shelf Life
Columbia CNA Agar should be protected from light and stored at 4°C to 8°C.
The medium side should be uppermost to prevent excessive moisture accumulation on the agar surface. Under these conditions, the medium has an 8-week shelf life from the date of manufacture.
Quality Control
After checking for correct pH, color, depth, and sterility, the following organisms are used to determine the growth performance of the completed medium.
Organism
Expected Result
Streptococcus pyogenes
Growth, β-hemolysis
Streptococcus pneumoniae
Growth, α-hemolysis
Staphylococcus aureus
Growth β-hemolysis or no-hemolysis
Proteus mirabilis
Partial inhibition
Inoculation of the Medium
Allow the medium to reach room temperature before inoculation.
Using a direct inoculum from the specimen, perform a four-quadrant streak to obtain well-isolated colonies. If desired, stabs into the medium can also be made to improve and better observe hemolytic reactions.
Depending on the organism of interest, incubate plates aerobically, anaerobically, or in a CO2-enriched environment at 35°C. The hemolytic reaction of some streptococci is influenced by the atmospheric environment of the incubator. For optimal results, culture plates are incubated in a 5% CO2-enriched environment.
Examine after 24 and 48 hours.
Interpretation of Results
After incubation, examine plates for growth and hemolysis. To observe hemolysis, view the culture plates with a bright light transmitting behind the plate. Four types of hemolysis can be seen in Columbia CNA Agar:
Alpha-hemolysis: Partial hemolysis results in a greenish discoloration around the colony.
Beta-hemolysis: Complete lysis of red blood cells resulting in a clear zone around the colonies.
Gamma-hemolysis: No hemolysis resulting in no change in the medium.
Alpha-prime-hemolysis: A small zone of complete hydrolysis surrounded by an area of partial hemolysis.
Uses
On conventional blood agar, gram-negative bacilli may outgrow gram-positive cocci. Columbia CNA agar helps to isolate gram-positive cocci (Streptococcus species and Staphylococcus species) when present in a mix-culture with gram-negative bacilli. The addition of sheep blood helps to differentiate species of Streptococcus as well.
Agar (agar agar) or bacteriological agar is a thermoreversible gelling agent extracted from the cell walls of smaller seaweeds (red algae). Agar is obtained from red algae belonging to the genera Gracilaria, Ahnfeltia, Gelidium, and Pterocladiella.
Bacteriological agar has no taste or smell and is often added to food with other ingredients. About 90% of agar is used for food applications such as bakery bread, ice cream, meringue, fruit puddings, jams, and marmalade. In microbiology laboratories, agar is commonly used to solidify culture media.
Bacteriological Agar
Bacteriological agar is a hydrophilic colloidal substance made from cell wall components of Gelidium and Rhodoyceae (marine algae) species. Agar is used to solidifying culture media because of its high gelling strength; a setting temperature of 32-39°C, and a melting temperature of 90-95°C. Low gelling temperature (34-36°C) allows the addition of heat-sensitive nutrients such as whole blood to be added safely at 45-50°C with a minimum risk of heat damage.
Bacteriological agar from a commercial supplier
Most agars used in bacteriological work produce a firm gel at an agar concentration of 1.5% w/v. At a concentration of 0.4-0.5% w/v, agar gives semisolid gel, which is used to make biochemical media and transport media such as Amies medium.
As agar media are used to grow bacteria, “Bacto” agars must not contain trace metals and other materials that might inhibit the growth of bacteria or fungi. The gels must be strong and have good clarity.
Bacteriological agar is obtained from sea algae at only a few harvesting sites and requires rigorous processing to remove naturally occurring pigments, salts, miscellaneous inhibitory substances, and bacterial spores. Manufacturers of bacteriological agar keep all processing details confidential. The increasing use of agar is pushing its cost, and also, there are shortages. So companies are searching for cheaper alternatives to agar to solidify culture media.
Usage History
Angelina Fanny Hesse (1850-1934) was the first to propose agar use in culture media. She is the wife of one of Robert Koch’s colleagues, Walther Hesse. Ironically, neither Lina nor Walter Hesse was given credit for using agar in microbiology.
Fanny Hesse suggested Robert Koch to add agar to his bacteriological media. The use of agar created a firm surface over which microorganisms could be spread very thinly, so thinly that some individual organisms were separated from all others. Robert Koch used agar to isolate Mycobacterium tuberculosis.
Chemical Nature
Agar (also called agar-agar) is a mixture of polysaccharides whose basic monomer is galactose. Agar consists of two fractions, agarose and agaropectin. Agarose is a linear polysaccharide and the gel-forming component; agaropectin is a branched, nongelling component of agar.
Chemical structure of Agar
Agar is a creamy white powder soluble in hot water but insoluble in cold water.
Agarose
Agarose is a neutral, long-chain polysaccharide formed by alternating D-galactose and 3,6-anhydro-alpha-L-galactopyranose residues joined by alpha-(1->3)- and beta-(1->4)-linkages. This electrically neutral polysaccharide is suitable for electrophoresis and chromatography.
Backbone structure of agarose.
Uses
Agar is widely used in many industries due to its ability to form a gel. The large difference between gel-forming and melting temperatures gives agar its unique properties.
Bacteriological agar is an indispensable ingredient in diagnostic labs and research projects, e.g., culture and AST, tissue culture, cell assays, etc. Due to the ease with which agar can be transported (dry, dissolved, and gelled), it is ubiquitous in the modern-day laboratory. In the Microbiology lab, agar is the most commonly used growth medium for microorganisms. Agar media is essential for isolating and identifying microorganisms/pathogens from various samples.
Agar is one of the most common basic media for gel electrophoresis, gel bead chromatography, and size exclusion chromatography. Due to its porous 3D framework, agar is frequently used in biomolecular separation and purification.
Agar has been fabricated in different forms (e.g., microspheres and films) to encapsulate molecules for sustained-drug delivery or immobilize proteins for tissue engineering. Due to the gelation property of agar, it is most often used as a hydrogel. Other applications of Agar are; emulsifier, carrier, lubricant, stabilizer, and laxative disintegrant in the pharmaceutical and cosmetic industries.
Applications in Food Industries
Refined grades of agar are used in food applications, and agar is easier to use in food gels than many other substances. Common food applications of agar include puddings, custards, and soft candies. In Asian countries, jellies made from agar and natural fruit juices are very popular. Agar improves the texture of processed cheese and frozen desserts.
In the Bakery industry, agar is used in icings and frostings because it is compatible with large amounts of sugar. Its products neither melt at high storage temperatures nor stick to the packaging material.
Agar-agar serves as a preservative in food processing and is used in baked goods to inhibit staling.
Agar is also used for the preparation of canned meat and fish products. It is also used in retorted meat products such as canned corned beef.
Agar-agar is high in dietary fiber (80 g per 100 g). Agar is used in low-calorie dishes, as it can not be digested in the gastrointestinal tract.
Agar’s properties are similar to gelatin. It is a good substitute for animal-based gelatin in vegetarian foods.
Agar is useful for the fermentation process.
In the agricultural industry, agar is a neutral carrier for nutrients and growth substances. Seedling germination herbaceous plants from meristematic tissue use agar as a nutrient substance.
Other uses of agar are; its usage in photographic emulsion, fermentation process, and making dental impressions, etc.
Alternatives
Apart from agar, media can be solidified by incorporating a gelling agent such as gelatin. Researches are underway to find newer and cost-effective alternatives to bacteriological agar.
Some possible candidates are; low-cost food-grade agar, cellulose produced by engineered bacteria, and fewer alternative gelling agents.
References and further readings
Agar. Food and Agriculture Organization of the United Nations. Retrieved from https://www.fao.org/3/y4765e/y4765e06.htm on 1st November 2022.
Production, Properties and Uses of Agar. Food and Agriculture Organization of the United Nations. Retrieved from https://www.fao.org/3/x5822e/x5822e03.htm on 1st November 2022.
Vanesa Ayala-Nunez. #FEMSmicroBlog: Got agar? Say thanks to Angelina Hesse!Federation of European Microbiological Societies. Retrieved from https://fems-microbiology.org/femsmicroblog-got-agar-say-thanks-to-angelina-hesse/ on 1st November 2022.
Culture media are fundamental in diagnostic microbiology. Nearly all media are commercially available as ready-to-use agar plates or tubes of broth. Laboratories in high-income countries procure ready-to-use culture media from specialized manufacturers.
Culture media can be prepared in-house by dissolving a specified amount of dehydrated media powder in distilled or deionized water, following the manufacturer’s recommendations. Laboratories in low and middle-income countries prefer preparing needed supplies of agars and broths using media powder instead of purchasing ready-to-use media.
In-house culture media preparation has inherent challenges, so this blog post tries to tackle this issue by compiling best practices for media preparation.
Manual preparation of culture media is labor intensive, so many companies have developed automated culture media preparation systems. If your lab can afford to purchase them, automated culture media preparation systems can save you manual labor and time.
When selecting culture media, look for products from reputable manufacturers supported by your national reference laboratory. Carefully check the product’s name, compositions, instructions for use, and shelf life. Look for humidity-proof packaging (screw cap, peel-off seal).
All bacteriology laboratories may need a minimal supply of basic nutrient media (such as nutrient agar or tryptic soy agar), enriched media (such as blood agar and chocolate agar), and selective media for Gram-positive (Columbia CNA agar), and Gram-negative bacteria (MacConkey agar).
There is a plethora of media with similar applications. Depending on the setting, you may need to keep stock of a few media for epidemic preparedness (e.g., TCBS in cholera risk settings). Get help from a clinical microbiologist to select the appropriate culture media needed for your laboratory.
Procurement, Storage, and Stock Management
Ensure your suppliers (both primary and backup) are reliable and provide after-sales support. Up on reception of goods, check and record;
product name and lot number
quantity received
expiry date and remaining shelf life
package integrity
order processing time
correctness of order delivery
At all times, follow the manufacturer’s instructions about storage conditions. For example, growth supplements such as egg yolk or antibiotic solutions should be stored at 2-8°C, whereas the base medium may be stored at room temperature, not exceeding 30°C.
Dehydrated media are stored in a cool, dry place, protected from light and dust. Monitor the storage area’s temperature and humidity. Do not store dehydrated media in the same room used for steam sterilizing, boiling materials, cleaning glassware, etc.
Organize the stock according to a first-in, first-out system, rank media in a logical order and separate opened from closed containers.
Dehydrated culture media
The shelf life of dehydrated powder is usually several years. However, dehydrated media are hygroscopic (i.e., it absorbs water) and quickly deteriorate when exposed to moisture. When exposed to moisture, a hard mass is formed, which alters the chemical and microbiological properties of the medium. This can be a serious problem for tropical countries with humid climates.
Therefore, record the opening date on the container and use the product for a maximum of 6 months after opening unless otherwise specified by the manufacturer. After this period, visual and performance checks are required. When not in use, keep containers tightly closed and seal the caps with adhesive tape.
Discard products when expired, when the powder is clumped, discolored, or not free flowing, or in case of quality issues; record product details and reasons for discarding.
Preparation of Culture Media
Materials/Equipment Requirement
Pyrex flask (conical flask) at least double the size of the batch
The dehydrated media should be calculated and weighed in a damp-free environment (low humidity), preferably under a laboratory fume hood. Ensure table, balance, and materials are clean, dust-free, and powder-free.
Balance
Top loading (precision) balance is suitable for weighing media. Position the balance on a level, stable, vibration-free table. Calibrate the balance at regular intervals (e.g., annually) and verify control weights before use.
Weighing of Culture Media
Materials and PPE
To prevent the risk of inhaling fine particles of dehydrated media, wear a dust mask while handling dehydrated media. Wear gloves to avoid skin contact. Wear safety goggles (e.g., for sodium deoxycholate) while using media with components that can cause skin and eye irritation (read product instructions). Wash hands before and after working with dehydrated culture media.
Calculate
Follow the manufacturer’s instructions. Prepare a table with pre-defined weights and volumes for a fixed number of plates. To prepare a solid medium with a depth of 4 mm in a Petri plate of 9 cm diameter, a volume of 20-25 mL is needed. Record product name, lot number, preparation date, weight and volume of water, and operator identification in a logbook.
Weighing
To facilitate weighing, use materials with pre-defined volume. Open the container and take the required amount of powder. Close the container immediately to protect it from humidity. Do not put the excess powder back into the bottle.
Mixing with Water and Heating
Boiling is often required to dissolve media powder, but specific manufacturers’ instructions printed in media package inserts should be followed exactly. Use fresh water prepared by distillation, deionization, or reverse osmosis. The presence of copper ions, high conductivity, and high pH may significantly alter the quality of in-house prepared media. Do not use tap water as it affects selectivity and pH.
Conical flasks containing dissolved culture media (image source)
The quality of glassware used for pouring media is also an important factor. Use Erlenmeyers, bottles, and graduated cylinders made of borosilicate glass to measure water and mix with media powder. If using reusable glassware, only borosilicate glassware should be used because soda glass can leach alkali into the media and change the pH of the medium, which may affect growth.
Procedure for dissolving the powder in water
Pour half of the required water into the flask, and add the pre-weighed powder. Pre-heating the water to 50-60°C may facilitate dissolution.
Stir or rotate for a few minutes (do not shake!)
Pour the rest of the water down the sides to dissolve any excess powder sticking to the flask walls (dry powder may not be sterilized in the autoclave)
Heating is required for dissolving agar-containing media. Do not close the flasks tightly.
Heat up to boiling, with frequent stirring, until the solution becomes clear.
Avoid boiling, overheating and foaming, scorching and burning, clumping, and inconsistent mixing.
Sterilization
Most media require sterilization, so only bacteria from patient specimens will grow and not contaminants from water or powdered media. Some media cannot be autoclaved (e.g., SS agar, Cary Blair agar)
Liquid media are distributed to individual tubes or bottles before sterilization. Autoclave a medium only when the ingredients are completely dissolved. Do not tighten the lids or caps completely. Agar media are sterilized in large flasks or bottles capped with either plastic screw caps or plugs before being placed in an autoclave.
Items are positioned in the autoclave with enough space for the steam to pass through. Autoclave indicator tape and chemical indicators are used.
The timing of autoclave sterilization should start from the moment the temperature reaches 121°C and usually requires a minimum of 15 minutes.
The volume of the media in one sterilization batch should be kept small; ideally, only two liters should be autoclaved at a time. Sterilization indicators such as the Bowie Dick test and biological indicators such as spores of Bacillus stearothermophilus should be used to monitor the proper working of an autoclave.
Once the sterilization cycle is completed, molten agar is allowed to cool to approximately 50°C before being distributed to individual Petri plates (approximately 20 to 25 mL of molten agar per plate).
Under-sterilization results in contaminated medium
Ensure
The wrapping allows for steam penetration
There is enough space between the items to allow steam circulation
To identify sterilized items use indicator tape to label the flask (medium name/code, preparation date, initials).
Use chemical indicators with each cycle (e.g., time-steam-temperature strips) and biological indicators on an interval basis to verify autoclave cycles.
Note
Use a ‘cool down program’ or wait until the pressure drops sufficiently before opening (70-80°C) to avoid fast pressure drop (liquid can boil over, and caps can be blown off).
Do not wait too long before unloading the autoclave; overheating may destroy media ingredients.
Fine-tuning (supplements and pH)
If other ingredients are to be added (e.g., supplements such as sheep blood or specific vitamins, nutrients, growth promoters, or antibiotics), they should be incorporated when the molten agar has cooled, just before distribution to plates.
The quality of the blood plays an important role in the performance of the blood-containing media, e.g., hemolytic reactions are well distinguished in sheep blood-containing media. The blood’s concentration, homogeneity, viscosity, and color should be checked before it is used for media preparation. The certificate of analysis and sterility conditions should be considered for other additives.
Adding supplements:
Let the media cool down to 45-50°C before adding heat-labile supplements
Filter-sterilize heat-labile supplements (not in the case of blood)
Let supplements come to room temperature before adding
Add sterile supplements aseptically
Ensure adequate mixing
Delicate media components that cannot withstand steam sterilization by autoclaving (e.g., serum, certain carbohydrate solutions, certain antibiotics, and other heat-labile substances) should be sterilized separately by membrane filtration. Passage of solutions through membrane filters with pores ranging in size from 0.2 to 0.45 um in diameter will not remove viruses but does effectively remove most bacterial and fungal contaminants.
Verification of pH after sterilization (not before):
Verify pH (usually at 25°C) with a pH meter before dispensing
Take 20 mL out of the flask, let it cool down, and measure pH. Keep the flask in a water bath.
Compare to the pH range specified in the manufacturer’s instructions. If pH is ok, continue with dispensing.
The pH of ready-made dehydrated media should not require adjustment. In case of deviation, verify water, dehydrated medium, glassware, and procedure and start again.
Dispensing of Prepared Culture Media
Cool down the culture media in a water bath (45-50°C) or hot plate stirrer before dispensing to minimize condensation. You can check the temperature with an infrared no-touch thermometer. Dispensing at too high temperature leads to excessive evaporation. If media stay too long in a water bath, it may cause precipitation (reheat, but do not overheat). Do not use cold water to cool down agar media, as it may lead to flakes or cloud formation.
Dispensing culture media
If using reusable glass Petri plates, sterilize them at 160°C for 2 hours in a hot air oven. Allow the oven to cool to 50°C before opening (to avoid cracking glassware). Dispense the media aseptically in a draught-free room (with closed windows), and avoid fans or climate control. Work close to the flame or in a biological safety cabinet
Procedure for dispensing agar media in plates
Flame sterilize the neck of the flask before and between pouring
Mix the culture media gently by rotating the flask before dispensing
Dispense on a level surface
For antimicrobial susceptibility testing, agar depth should be 4 ± 0.5 mm: Circular Petri plate of 90 mm: about 25 mL
Use sterile, graduated pipettes or media distribution syringe/pump
Avoid forming air bubbles (flame surface or use a heated loop to remove them).
Dispensing and Drying of Culture Media
Dispensing of agar or liquid media in tubes
Use tubes with lids that allow ventilation (e.g., screw caps), do not tighten completely.
Put tubes in an autoclavable rack.
Mix gently by rotating the flask before dispensing
Dispense the correct volume per tube. Use sterile, graduated pipettes or a media distribution syringe/pump
Close screw caps tightly after autoclaving
Drying of plates/tubes
Dry for several hours at room temperature (up to 24 hours) to remove condensation.
Selective media: ± 30 minutes with lid ajar. If contamination risk: keep lids closed.
Dry before packing to prevent condensation on the lids. Avoid over-drying (cracks).
Drying depends on the type of media:
For agar slants, let dry in a sloped position to give a butt of 2.5-3 cm deep and a slope of 2-2.5 cm long. Use a standardized and validated rack.
For agar, semi-solid tubes, and liquid media: let dry in a rack (vertical position).
Preparation of Culture Media
Packing and Storage
Label individual plates with name (abbreviated/code), preparation date, and lot number. Wrap the plates in sealed, labeled plastic bags, a maximum of ten plates per bag, to avoid moisture. Store them upside down, at 2-8°C, in the dark following manufacturer’s instructions.
Shelf life
Agar media in Petri plates.
Blood agar: 7 days; with unstable additives: 2-5 days
Most selective media: 5-7 days
Nutrient agar without blood: 2-4 weeks
In tubes
Simple, non-selective broths and agars: 6 months
Selective media: 3 weeks (2-8 weeks)
Selenite broth: 2-3 months
Quality Control
Finally, all media, whether purchased or prepared, must be subjected to stringent quality control before being used in the diagnostic setting. Quality control (QC) should be based on a pragmatic, risk-based approach. Newly prepared and dispensed media should be quarantined until they pass QC. Read more about quality control of culture media.
Using Culture media
Bring the culture media to room temperature before use. Ensure there are no visible drops of water on the agar surface or inside the lid. If seen, do not shake off condensation water from the lid.
Instead, dry plates for 20-30 minutes at 35-37°C with agar plates upside down and agar base resting at an angle on the lid (if necessary, dry plates at 20-25°C overnight).
Do not over-dry plates (cracks in surface, surface wrinkled).
Visual sterility check before use is a mandatory step. Check the plates for contamination or growth of colonies.
Disposal of used culture media
For disposal of used culture media, follow in-country or WHO guidelines, which recommend inactivation and subsequent incineration before disposal. Inactivation (so-called ‘destruction’ or Level III inactivation) should be done in the laboratory, preferably by autoclaving.
Most Common Errors and Possible Causes
Clumped and free-flowing media
Clumping of dehydrated culture media
Humidity too high during storage
The container was left open for too long or was not closed tightly after opening
Dehydrated culture medium beyond the shelf life
Wrong pH
pH meter not calibrated
pH verification done on too hot medium (generally to be done at 25°C)
Use of poor-quality water or container
Use of chemically contaminated containers Incomplete dissolution/mixture of medium
Dehydrated medium stored incorrectly (e.g., not tightly closed) or beyond the shelf life
Incomplete solubility
Use of inadequate water
Inadequate heating/inadequate timing for dissolution
Insufficient soaking or incomplete mixing
Flask too small to allow adequate mixing and/or convection
Darkening, caramelization
Overheating: excessive sterilization, heterogeneous mixing medium kept at 50°C for too long, repeated re-melting or too high temperature.
Incomplete dissolution of medium
Incomplete gelling or soft agar
Incorrect proportions of product to water: error in weighing or over-dilution
Agar not properly dissolved: poor mixing prolonged storage at 50°C
Overheating of culture medium, possibly at low pH
Repeated re-melting causes overheating
Turbidity, precipitation
Poor quality of dehydrated media
Use of poor-quality of water or container
Overheating: excessive sterilization, heterogeneous mixing medium kept at 50°C for too long, repeated re-melting or too high temperature.
Wrong pH
Incomplete dissolution/mixture of medium
Loss of water of the prepared culture medium due to evaporation
Poor growth or loss of differential properties
Incorrect or improperly maintained QC organisms used
Overheating: excessive sterilization, heterogeneous mixing medium kept at 50°C for too long, repeated
re-melting or at too high temperature
Incomplete dissolution/mixture of medium
Inhibitory substances in water, container or inoculum Wrong PH
Orekan J, Barbé B, Oeng S, Ronat JB, Letchford J, Jacobs J, Affolabi D, Hardy L. Culture media for clinical bacteriology in low- and middle-income countries: challenges, best practices for preparation and recommendations for improved access. Clin Microbiol Infect. 2021 Oct;27(10):1400-1408. doi: 10.1016/j.cmi.2021.05.016. Epub 2021 May 18. PMID: 34015533.
Lysine Iron Agar (LIA) is a combination medium used for the differentiation of gram-negative bacilli (enterics) based on decarboxylation or deamination of lysine and the formation of hydrogen sulfide (H2S). In combination with Triple Sugar Iron (TSI) agar, LIA is used to identify members of Salmonella and Shigella.
Lysine iron agar (LIA) contains peptone and yeast extract to support bacterial growth. The amino acid lysine is used for detecting deamination and decarboxylation reactions. A small amount of glucose (0.1%) is a fermentable carbohydrate.
Sodium thiosulfate is a source of reducible sulfur. Ferric ammonium citrate is included as a sulfur reduction indicator. The H2S-producing organism produces black color in the medium due to black precipitation of ferrous sulfide (FeS). Bromocresol purple, the pH indicator, is yellow at or below pH 5.2 and purple at or above pH 6.8.
Principle
Lysine iron agar contains an aerobic slant and an anaerobic butt. The test organism is stabbed in the butt and streaked on the slant in a fishtail streak. The tube is then tightly capped and incubated for 18 to 24 hours before reading the results.
Breakdown of Lysine
In the anaerobic butt, organisms capable of glucose fermentation produce acid, resulting in yellow color. If the organism produces lysine decarboxylase, it removes CO2 from L-lysine and forms cadaverine, an alkaline product. Cadaverine neutralizes the organic acids formed by glucose fermentation, and the butt of the medium reverts to the original alkaline state (purple). The purple color throughout indicates lysine decarboxylation. The purple color in the slant with a yellow (acidic) butt indicates no lysine decarboxylation.
Deamination reactions require the presence of oxygen. Therefore, any evidence of deamination will be seen only in the slant. If the organism produces lysine deaminase, the resulting deamination reaction will produce compounds that react with the ferric ammonium citrate and a coenzyme, flavin mononucleotide (FMN), forming a burgundy (dark red color) on the slant. A red slant with a yellow (acidic) butt indicates lysine deamination.
Hydrogen sulfide (H2S) is produced in LIA by the anaerobic reduction of thiosulfate. Ferric ions in the medium react with the H2S to form a black precipitate in the butt.
Procedure
Preparation of the medium
Suspend 33 grams of the medium in 1000 mL of demineralized water.
Heat to boiling with agitation to completely dissolve
Dispense into tubes and sterilize by autoclaving at 121°C for 15 minutes.
Cool in a slanted position to that deep butts are formed.
Inoculation of the medium
With a straight inoculating needle, inoculate LIA by stabbing through the center of the medium to approximately within 3 mm of the bottom of the tube.
Streak the slant of the medium while removing the inoculating loop from the stab.
Cap the tube tightly and incubate at 35°C to 37°C in ambient air for 18 to 24 hours.
Proteus spp. that produces hydrogen sulfide but does not produce lysine decarboxylase will not blacken the LIA medium since the acid in the butt suppress H2S formation. Additional testing, such as triple sugar iron (TSI) agar, should be used as a follow-up identification method.
LIA is not a substitute for TSI.
Quality Control
Alkaline slant and butt: H2S positive: Citrobacter freundii (ATCC8090)
Alkaline slant and butt: Escherichia coli (ATCC25922)
Alkaline slant and butt: H2S positive: Salmonella typhimurium (ATCC14028)
Red slant, acid butt: Proteus mirabilis (ATCC12453)
Czapek medium is also called Czapek’s agar (CZA) or Czapek-Dox medium. Czapek agar is named after the Friedrich Johann Franz Czapek. He invented this medium and was later modified by Arthur Wayland Dox. Thus the name Czapek-Dox medium is derived. It is used for the general cultivation of fungi from the water sample and the cultivation of saprophytic fungi and soil bacteria. Sucrose and nitrate are the sources of carbon and nitrogen, respectively.
The modified form of the Czapek Dox Agar is the Oxoid Czapek Dox Agar. This modified form prevents the precipitation of magnesium phosphate. The medium has good buffering action due to the presence of different salts. It highly supports Candidaalbicansfor chlamydospore production.
Principle of Czapek Dox Agar
Czapek Dox Agar is the semisynthetic medium used to cultivate fungi (yeasts, molds, filamentous species). Sodium nitrate is the sole nitrogen source, while sucrose is the sole carbon source. Czapek Dox Agar is used to isolate the Aspergillus, Penicillium, Paecilomyces, and other fungi having the same requirement. Dipotassium phosphate buffers the medium. The essential ions required for the medium is provided by magnesium sulphate, potassium chloride, and ferrous sulphate. Agar present in the medium is the solidifying agent. In the modified form of the Czapek Dox Agar, the magnesium glycerophosphate and potassium sulfate have replaced the magnesium sulfate and potassium phosphate of the media. This modification helps to prevent the precipitation of magnesium phosphate.
Before pouring in the sterile plates, mix them properly. If it is not mixed well, agar may sediment at the bottom, due to which the media plates do not set well due to the improper aliquot of the agar.
Colony Characteristics in Czapek Dox Agar
Candida albicans: cream-colored colonies
Aspergillus niger: White/yellow mycelium, black spores
Aspergillus flavus: granular, flat, often with radial grooves and yellow
Figure: Colonies of different fungal species on Czapek dox solution agar media after incubation at 27°C for 4-5 days. (a) A. flavus, (b) A. parasiticus, (c) A. carbonarius, (d) A. niger, (e) A. ochraceous, and (f) P. verucosum.
Uses
Czapek Dox Agar is used for the isolation of Aspergillus, Penicillium, Paecilomyces, and other fungi.
It is used for testing water and wastewater samples to isolate the Aspergillus, Penicillium, and other fungi.
Czapek medium is also used for the taxonomic studies of Penicillium.
Acidophilic organisms like yeast can be cultivated in the Czapek Agar by increasing the acidity of the medium.
Limitation
It does not support the growth of fastidious organisms.
References
Chander, J. (2018). Textbook of Medical Mycology (Fourth edition). Jaypee Brothers Medical Publishers Ltd.
Saleemi, M. K., Khan, M. Z., & Khan, A. (2016). Study of fungi and their toxigenic potential isolated from wheat and wheat bran. Toxin Reviews, 0(0), 000. https://doi.org/10.1080/15569543.2016.1233890
HIMEDIA Laboratories. (2015). Czapek Dox Agar Specimen Collection and Handling: Warning and Precautions: Limitations: 6–9.
Phenylethyl alcohol agar (PEA) is a selective medium used to cultivate Gram-positive organisms, particularly cocci, from a sample containing a mixture of pathogens. The active ingredient, phenylethyl alcohol, inhibits or markedly reduces the growth of Gram-negative organisms by interfering with DNA synthesis. Staphylococcus aureus, a Gram-positive organism, grows on PEA while Serratia marcescens, a Gram-negative organism, does not.
Principle
Phenylethyl alcohol agar (PEA) is a selective medium that permits the growth of gram-positive cocci while inhibiting most gram-negative organisms. PEA alters the membrane permeability, of Gram-negative bacteria allowing influx of otherwise blocked molecules. This results in leakage of large amounts of cellular potassium that ultimately results in disruption or inhibition of DNA synthesis of Gram-negative bacteria.
Composition of PEA
PEA agar medium can be purchased as a premixed powder from suppliers. The manufacturer’s instructions should be followed to prepare the plates. This media can also be purchased as premade agar plates.
Phenylethyl alcohol agar (PEA) may be prepared with and without 5% sheep blood supplement. Five percent sheep blood is added to the base medium to enhance the growth of anaerobic bacteria.
Preparation of phenylethyl alcohol agar (PEA)
Suspend the ingredients in one liter of distilled water and mix thoroughly
Heat with frequent agitation and boil for 1 minute to dissolve completely.
Pour the melted medium into sterilized Petri plates (approximately 20 to 30 ml per plate) and let it solidify.
Step no. 5 is required while preparing PEA with 5% sheep blood supplementation.
Note:
Characteristics
PEA without sheep blood
PEA with 5% sheep blood
Color of the prepared media
clear to slightly hazy and pale yellow.
firm, opaque, and red in color.
Shelf live
prepared plates can be stored in the refrigerator for up to 4 weeks before use.
prepared plates could be stored in the refrigerator up to 1 week before use.
Culture
Inoculation
Stored media should be brought to room temperature before inoculation.
Aseptically transfer potentially mixed cultures onto the surface of the agar using a streaking or spreading technique, depending on the objectives of the study.
Incubation
Incubate plates for 24 to 48 hours at 35°C ± 2 °C in an appropriate atmosphere. Depending on the objectives of the study, PEA blood agar plates can be incubated under aerobic, anaerobic, and 5% CO2 atmosphere. Incubation in a high CO2 atmosphere allows the detection of bacteria that require an increased CO2 concentration and also results in better growth of almost all of the other pathogens.
Interpretation of results
After proper incubation growth of bacteria will appear as colonies on the surface of agar plates. Gram-positive bacteria demonstrate good growth while most gram-negative bacteria do not grow or are partially inhibited.
PEA agar plates with 5% sheep blood incubated at 48 hours at 35°C Left: Escherichia coli. Right: Staphylococcus aureus Image source: Cheeptham and Farday, ASM MicrobeLibrary
Growth Response
Growth response of some gram-positive and gram-negative bacteria on PEA agar
Organism
Gram reaction
Growth response
Escherichia coli
Gram-negative
Inhibited
Enterobacter aerogenes
Gram-negative
Inhibited
Proteus mirabilis
Gram-negative
Markedly inhibited. Swarming inhibition.
Pseudomonas aeruginosa
Gram-negative
Partially inhibited
Salmonella enteritidis
Gram-negative
Inhibited
Bacillus sp.
Gram-positive
Good
Clostridium perfringens
Gram-positive
Partially inhibited
Enterococcus faecalis
Gram-positive
Good
Micrococcus luteus
Gram-positive
Good
Staphylococcus aureus
Gram-positive
Good
Streptococcus pneumoniae
Gram-positive
Good
Streptococcus pyogenes
Gram-positive
Good
PEA agar plates without blood incubated at 48 hours at 35°C Left: Escherichia coli. Right: Enterococcus faecalis Image source: Cheeptham and Farday, ASM MicrobeLibrary
Uses
PEA agar is used if the sample source contains a mixture of pathogens (e.g., gastrointestinal content or peritoneal fluid) or Gram stain indicates that the culture contains Gram-negative rods. Phenylethyl alcohol agar inhibits gram-negative bacteria, specifically Proteus species, in specimens containing mixed bacterial flora. It is used for the selective growth of Staphylococcus and Streptococcus in mixed cultures.
PEA agar with 5% sheep blood is used to isolate most gram-positive and gram-negative anaerobes from enteric samples. It inhibits facultative gram-negative rods, preventing Enterobacteriaceaefrom overgrowing the anaerobes and inhibiting the swarming of Proteus and Clostridium septicum.
Limitations
Some gram-positive cocci may be slightly inhibited by PEA and many require incubation up to 48 hours for sufficient growth to be visible.
Pesudomonas aeruginosa (a gram-negative bacteria) is not inhibited on this medium. Other gram-negatives sometimes may give tiny observable colonies but they are often confined to the first quadrant on a streak plate.
References and further readings
Archana Lal, Naowarat Cheeptham. 2011. Phenylethyl alcohol agar protocol. American Society for Microbiology
Clinical Microbiology Procedures Handbook, Fourth Edition. (2016). American Society of Microbiology. https://doi.org/10.1128/9781555818814